Custom Analysis


1) General settings:





IDs from the following species are analysed: BOVINE, HUMAN, RAT, MOUSE, GOAT and SHEEP


Select your species:



2) Input IDs:

Use a sample file:

Example of IDs that can be used: Q15848 or ADIPO_HUMAN or ADIPOQ or gi|62022275 (or login and use ProteCONVERT to get right IDs)

INPUT

OR

PASTE


  • DISABLE




OR


Input file tutorial : How to create my input file? Which file can I use?

3) Presets buttons:

You can use pre-set buttons and run the job OR select directly your own settings using the "4) Settings" section.

Select your species before using these buttons!


Options Enable Disable Description
Basic Analysis
Basic Analysis with PPI extension
Will activate same options as the Basic Analysis, and will activate a second search of PPi with protein outside of the dataset in the selected species.
Gene Ontology
Complete Analysis
Will activate all options of the Functional Annotation module: electronic annotation and GOTree network.
Protein Interactions
More interactions databases
Will activate all options of the Protein Interactions research. Will use interactions from databases of Protein-Protein and Smallmolecule-Protein interactions.
Full analysis
All modules and all options
Will activate maximum settings and options for each module of ProteINSIDE.

4) Settings:

Functional annotation according to Gene Ontology:

1]

2]

3]


Prediction of signal peptides (powered with SignalP 4.1):

1]

2]


Protein-protein interactions (powered with Psicquic):

Psicquic webservice status: ONLINE


1]


2] PPi software type:

Settings Options
Number of interactions
by proteins

---> No more than interactions by protein

Active PPi with proteins
outside of the dataset

---> PPi research outside of the dataset:
(see on FAQ)

Select the study species OR another species:

OR


PPi databases

---> Select PPi databases among those proposed by Psicquic:
A]

OR



B]

OR



C] Select the databases depending on the interaction types:
Number of rows


Start the analysis

You have to select an input file or paste your ID to be allow to run an analysis.